WRF data and Xarray¶
WRF data, from the Weather Research and Forecasting Model, is supported by and commonly used by NCAR scientists. Unfortunately, WRF datafiles are not formatted by the now-popular CF conventions that make it easy to load them into an Xarray dataset: WRF time is in bytes and lat-lon coordinates are stored in a separate file from the data itself.
We encourage scientists to use Xarray because it provides data structures for in-memory analytics that utilize and preserve labels.
While it may take a few extra steps, WRF data is still compatible with Xarray. We acknowled that these steps are not intuitive to scientists that have been using WRF for years but are new to Xarray or Python in general.
This notebook demonstrates using a WRF datafile with the Xarray module and the manipulations necessary to get the dataset into CF conventions understood by Xarray.
[1]:
import xarray as xr
import matplotlib.pyplot as plt
import pandas as pd
from ngallery_utils import DATASETS
First, take a look at the WRF dataset:
[2]:
path = DATASETS.fetch("T2_RR_F_2014_08.nc")
ds_wrf = xr.open_dataset(path)
ds_wrf
Downloading file 'T2_RR_F_2014_08.nc' from 'ftp://ftp.cgd.ucar.edu/archive/aletheia-data/tutorial-data/T2_RR_F_2014_08.nc' to '/home/jovyan/aletheia-data/tutorial-data'.
[2]:
<xarray.Dataset> Dimensions: (Time: 720, south_north: 159, west_east: 159) Dimensions without coordinates: Time, south_north, west_east Data variables: PREC_ACC_NC (Time, south_north, west_east) float32 ... T2 (Time, south_north, west_east) float32 ... Times (Time) |S19 b'2014-08-01_00:00:00' ... b'2014-08-30_23:00:00' U10 (Time, south_north, west_east) float32 ... V10 (Time, south_north, west_east) float32 ... Attributes: TITLE: OUTPUT FROM WRF V3.9 MODEL START_DATE: 2014-08-01_00:00:00 SIMULATION_START_DATE: 2014-08-01_00:00:00 WEST-EAST_GRID_DIMENSION: 160 SOUTH-NORTH_GRID_DIMENSION: 160 BOTTOM-TOP_GRID_DIMENSION: 51 DX: 1000.0 DY: 1000.0 SKEBS_ON: 0 SPEC_BDY_FINAL_MU: 1 USE_Q_DIABATIC: 0 GRIDTYPE: C DIFF_OPT: 1 KM_OPT: 4 DAMP_OPT: 3 DAMPCOEF: 0.2 KHDIF: 0.0 KVDIF: 0.0 MP_PHYSICS: 28 RA_LW_PHYSICS: 4 RA_SW_PHYSICS: 4 SF_SFCLAY_PHYSICS: 1 SF_SURFACE_PHYSICS: 4 BL_PBL_PHYSICS: 1 CU_PHYSICS: 0 SF_LAKE_PHYSICS: 0 SURFACE_INPUT_SOURCE: 1 SST_UPDATE: 1 GRID_FDDA: 0 GFDDA_INTERVAL_M: 0 GFDDA_END_H: 0 GRID_SFDDA: 0 SGFDDA_INTERVAL_M: 0 SGFDDA_END_H: 0 HYPSOMETRIC_OPT: 2 USE_THETA_M: 0 GWD_OPT: 0 SF_URBAN_PHYSICS: 0 SF_OCEAN_PHYSICS: 0 SHCU_PHYSICS: 0 MFSHCONV: 0 FEEDBACK: 0 SMOOTH_OPTION: 2 SWRAD_SCAT: 1.0 W_DAMPING: 1 DT: 5.0 RADT: 10.0 BLDT: 0.0 CUDT: 0.0 AER_OPT: 3 SWINT_OPT: 0 AER_TYPE: 1 AER_AOD550_OPT: 1 AER_ANGEXP_OPT: 1 AER_SSA_OPT: 1 AER_ASY_OPT: 1 AER_AOD550_VAL: 0.12 AER_ANGEXP_VAL: 1.3 AER_SSA_VAL: 0.85 AER_ASY_VAL: 0.9 MOIST_ADV_OPT: 1 SCALAR_ADV_OPT: 1 TKE_ADV_OPT: 1 DIFF_6TH_OPT: 0 DIFF_6TH_FACTOR: 0.12 OBS_NUDGE_OPT: 0 BUCKET_MM: 100.0 BUCKET_J: 1000000000.0 PREC_ACC_DT: 60.0 ISFTCFLX: 0 ISHALLOW: 0 ISFFLX: 1 ICLOUD: 1 ICLOUD_CU: 0 TRACER_PBLMIX: 1 SCALAR_PBLMIX: 1 YSU_TOPDOWN_PBLMIX: 0 GRAV_SETTLING: 0 OPT_SFC: 1 DVEG: 4 OPT_CRS: 1 OPT_BTR: 2 OPT_RUN: 1 OPT_FRZ: 1 OPT_INF: 1 OPT_RAD: 3 OPT_ALB: 2 OPT_SNF: 4 OPT_TBOT: 1 OPT_STC: 1 OPT_GLA: 1 OPT_RSF: 1 DFI_OPT: 0 SIMULATION_INITIALIZATION_TYPE: REAL-DATA CASE WEST-EAST_PATCH_START_UNSTAG: 1 WEST-EAST_PATCH_END_UNSTAG: 159 WEST-EAST_PATCH_START_STAG: 1 WEST-EAST_PATCH_END_STAG: 160 SOUTH-NORTH_PATCH_START_UNSTAG: 1 SOUTH-NORTH_PATCH_END_UNSTAG: 159 SOUTH-NORTH_PATCH_START_STAG: 1 SOUTH-NORTH_PATCH_END_STAG: 160 BOTTOM-TOP_PATCH_START_UNSTAG: 1 BOTTOM-TOP_PATCH_END_UNSTAG: 50 BOTTOM-TOP_PATCH_START_STAG: 1 BOTTOM-TOP_PATCH_END_STAG: 51 GRID_ID: 2 PARENT_ID: 1 I_PARENT_START: 85 J_PARENT_START: 89 PARENT_GRID_RATIO: 3 CEN_LAT: 60.36686 CEN_LON: 7.049286 TRUELAT1: 30.0 TRUELAT2: 50.0 MOAD_CEN_LAT: 60.0 STAND_LON: 5.59998 POLE_LAT: 90.0 POLE_LON: 0.0 GMT: 0.0 JULYR: 2014 JULDAY: 214 MAP_PROJ: 1 MAP_PROJ_CHAR: Lambert Conformal MMINLU: USGS NUM_LAND_CAT: 28 ISWATER: 16 ISLAKE: 28 ISICE: 24 ISURBAN: 1 ISOILWATER: 14 HYBRID_OPT: -1 ETAC: 0.0 history: Tue Feb 5 11:36:06 2019: ncrcat all_T2_... NCO: netCDF Operators version 4.7.4 (http://n... nco_openmp_thread_number: 1 history_of_appended_files: Tue Feb 5 11:36:06 2019: Appended file ...
- Time: 720
- south_north: 159
- west_east: 159
- PREC_ACC_NC(Time, south_north, west_east)float32...
- FieldType :
- 104
- MemoryOrder :
- XY
- description :
- ACCUMULATED GRID SCALE PRECIPITATION OVER prec_acc_dt PERIODS OF TIME
- units :
- mm
- stagger :
- coordinates :
- XLONG XLAT XTIME
[18202320 values with dtype=float32]
- T2(Time, south_north, west_east)float32...
- FieldType :
- 104
- MemoryOrder :
- XY
- description :
- TEMP at 2 M
- units :
- K
- stagger :
- coordinates :
- XLONG XLAT XTIME
[18202320 values with dtype=float32]
- Times(Time)|S19...
array([b'2014-08-01_00:00:00', b'2014-08-01_01:00:00', b'2014-08-01_02:00:00', ..., b'2014-08-30_21:00:00', b'2014-08-30_22:00:00', b'2014-08-30_23:00:00'], dtype='|S19')
- U10(Time, south_north, west_east)float32...
- FieldType :
- 104
- MemoryOrder :
- XY
- description :
- U at 10 M
- units :
- m s-1
- stagger :
- coordinates :
- XLONG XLAT XTIME
[18202320 values with dtype=float32]
- V10(Time, south_north, west_east)float32...
- FieldType :
- 104
- MemoryOrder :
- XY
- description :
- V at 10 M
- units :
- m s-1
- stagger :
- coordinates :
- XLONG XLAT XTIME
[18202320 values with dtype=float32]
- TITLE :
- OUTPUT FROM WRF V3.9 MODEL
- START_DATE :
- 2014-08-01_00:00:00
- SIMULATION_START_DATE :
- 2014-08-01_00:00:00
- WEST-EAST_GRID_DIMENSION :
- 160
- SOUTH-NORTH_GRID_DIMENSION :
- 160
- BOTTOM-TOP_GRID_DIMENSION :
- 51
- DX :
- 1000.0
- DY :
- 1000.0
- SKEBS_ON :
- 0
- SPEC_BDY_FINAL_MU :
- 1
- USE_Q_DIABATIC :
- 0
- GRIDTYPE :
- C
- DIFF_OPT :
- 1
- KM_OPT :
- 4
- DAMP_OPT :
- 3
- DAMPCOEF :
- 0.2
- KHDIF :
- 0.0
- KVDIF :
- 0.0
- MP_PHYSICS :
- 28
- RA_LW_PHYSICS :
- 4
- RA_SW_PHYSICS :
- 4
- SF_SFCLAY_PHYSICS :
- 1
- SF_SURFACE_PHYSICS :
- 4
- BL_PBL_PHYSICS :
- 1
- CU_PHYSICS :
- 0
- SF_LAKE_PHYSICS :
- 0
- SURFACE_INPUT_SOURCE :
- 1
- SST_UPDATE :
- 1
- GRID_FDDA :
- 0
- GFDDA_INTERVAL_M :
- 0
- GFDDA_END_H :
- 0
- GRID_SFDDA :
- 0
- SGFDDA_INTERVAL_M :
- 0
- SGFDDA_END_H :
- 0
- HYPSOMETRIC_OPT :
- 2
- USE_THETA_M :
- 0
- GWD_OPT :
- 0
- SF_URBAN_PHYSICS :
- 0
- SF_OCEAN_PHYSICS :
- 0
- SHCU_PHYSICS :
- 0
- MFSHCONV :
- 0
- FEEDBACK :
- 0
- SMOOTH_OPTION :
- 2
- SWRAD_SCAT :
- 1.0
- W_DAMPING :
- 1
- DT :
- 5.0
- RADT :
- 10.0
- BLDT :
- 0.0
- CUDT :
- 0.0
- AER_OPT :
- 3
- SWINT_OPT :
- 0
- AER_TYPE :
- 1
- AER_AOD550_OPT :
- 1
- AER_ANGEXP_OPT :
- 1
- AER_SSA_OPT :
- 1
- AER_ASY_OPT :
- 1
- AER_AOD550_VAL :
- 0.12
- AER_ANGEXP_VAL :
- 1.3
- AER_SSA_VAL :
- 0.85
- AER_ASY_VAL :
- 0.9
- MOIST_ADV_OPT :
- 1
- SCALAR_ADV_OPT :
- 1
- TKE_ADV_OPT :
- 1
- DIFF_6TH_OPT :
- 0
- DIFF_6TH_FACTOR :
- 0.12
- OBS_NUDGE_OPT :
- 0
- BUCKET_MM :
- 100.0
- BUCKET_J :
- 1000000000.0
- PREC_ACC_DT :
- 60.0
- ISFTCFLX :
- 0
- ISHALLOW :
- 0
- ISFFLX :
- 1
- ICLOUD :
- 1
- ICLOUD_CU :
- 0
- TRACER_PBLMIX :
- 1
- SCALAR_PBLMIX :
- 1
- YSU_TOPDOWN_PBLMIX :
- 0
- GRAV_SETTLING :
- 0
- OPT_SFC :
- 1
- DVEG :
- 4
- OPT_CRS :
- 1
- OPT_BTR :
- 2
- OPT_RUN :
- 1
- OPT_FRZ :
- 1
- OPT_INF :
- 1
- OPT_RAD :
- 3
- OPT_ALB :
- 2
- OPT_SNF :
- 4
- OPT_TBOT :
- 1
- OPT_STC :
- 1
- OPT_GLA :
- 1
- OPT_RSF :
- 1
- DFI_OPT :
- 0
- SIMULATION_INITIALIZATION_TYPE :
- REAL-DATA CASE
- WEST-EAST_PATCH_START_UNSTAG :
- 1
- WEST-EAST_PATCH_END_UNSTAG :
- 159
- WEST-EAST_PATCH_START_STAG :
- 1
- WEST-EAST_PATCH_END_STAG :
- 160
- SOUTH-NORTH_PATCH_START_UNSTAG :
- 1
- SOUTH-NORTH_PATCH_END_UNSTAG :
- 159
- SOUTH-NORTH_PATCH_START_STAG :
- 1
- SOUTH-NORTH_PATCH_END_STAG :
- 160
- BOTTOM-TOP_PATCH_START_UNSTAG :
- 1
- BOTTOM-TOP_PATCH_END_UNSTAG :
- 50
- BOTTOM-TOP_PATCH_START_STAG :
- 1
- BOTTOM-TOP_PATCH_END_STAG :
- 51
- GRID_ID :
- 2
- PARENT_ID :
- 1
- I_PARENT_START :
- 85
- J_PARENT_START :
- 89
- PARENT_GRID_RATIO :
- 3
- CEN_LAT :
- 60.36686
- CEN_LON :
- 7.049286
- TRUELAT1 :
- 30.0
- TRUELAT2 :
- 50.0
- MOAD_CEN_LAT :
- 60.0
- STAND_LON :
- 5.59998
- POLE_LAT :
- 90.0
- POLE_LON :
- 0.0
- GMT :
- 0.0
- JULYR :
- 2014
- JULDAY :
- 214
- MAP_PROJ :
- 1
- MAP_PROJ_CHAR :
- Lambert Conformal
- MMINLU :
- USGS
- NUM_LAND_CAT :
- 28
- ISWATER :
- 16
- ISLAKE :
- 28
- ISICE :
- 24
- ISURBAN :
- 1
- ISOILWATER :
- 14
- HYBRID_OPT :
- -1
- ETAC :
- 0.0
- history :
- Tue Feb 5 11:36:06 2019: ncrcat all_T2_RR_F_2014_2019_SST.nc /glade/scratch/trude/evoglac/run_wrf/run/some_2d/T2_RR_F_2018-05-20_13.nc /glade/scratch/trude/evoglac/run_wrf/run/some_2d/T2_RR_F_2018-05-20_14.nc /glade/scratch/trude/evoglac/run_wrf/run/some_2d/T2_RR_F_2018-05-20_15.nc /glade/scratch/trude/evoglac/run_wrf/run/some_2d/T2_RR_F_2018-05-20_16.nc /glade/scratch/trude/evoglac/run_wrf/run/some_2d/T2_RR_F_2018-05-20_17.nc /glade/scratch/trude/evoglac/run_wrf/run/some_2d/T2_RR_F_2018-05-20_18.nc /glade/scratch/trude/evoglac/run_wrf/run/some_2d/T2_RR_F_2018-05-20_19.nc /glade/scratch/trude/evoglac/run_wrf/run/some_2d/T2_RR_F_2018-05-20_20.nc /glade/scratch/trude/evoglac/run_wrf/run/some_2d/T2_RR_F_2018-05-20_21.nc /glade/scratch/trude/evoglac/run_wrf/run/some_2d/T2_RR_F_2018-05-20_22.nc /glade/scratch/trude/evoglac/run_wrf/run/some_2d/T2_RR_F_2018-05-20_23.nc /glade/scratch/trude/evoglac/run_wrf/run/some_2d/T2_RR_F_2018-05-21_00.nc 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